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Gilbert, D., Heiner, M., Ghanbar, L. and Chodak, J. (2019) ''. BMC Bioinformatics, 20 (Suppl 4). pp. 1 - 23. ISSN: 1471-2105

Self, T., Gilbert, D. and Heiner, M. (2018) ''.Computational Methods in Systems Biology: CMSB 2018. Brno, Czech Republic. 12 - 14 September. Springer International Publishing. pp. 39 - 58. ISSN: 0302-9743

Colombo, R., Damiani, C., Gilbert, D., Heiner, M., Mauri, G. and Pescini, D. (2018) ''. BMC Bioinformatics, 19 (251). pp. 251. ISSN: 1471-2105

Gilbert, D., Heiner, M. and Rohr, C. (2018) ''. Natural Computing, 17 (1). pp. 161 - 182. ISSN: 1567-7818

Lui, F., Heiner, M. and Gilbert, D. (2017) ''. Briefings in Bioinformatics, 20 (3). pp. 877 - 886. ISSN: 1467-5463

Gilbert, D., Heiner, M., Jayaweera, Y. and Rohr, C. (2017) ''. Briefings in Bioinformatics, 20 (4). pp. 1167 - 1180. ISSN: 1467-5463

Pârvu, O. and Gilbert, D. (2016) ''. PLOS ONE, 11 (5). pp. e0154847 - e0154847. ISSN: 1932-6203

Pârvu, O., Gilbert, D., Heiner, M., Liu, F., Saunders, N. and Shaw, S. (2015) ''. ACM Transactions on Modeling and Computer Simulation, 25 (2). pp. 1 - 25. ISSN: 1049-3301

Parvu, O. and Gilbert, D. (2014) ''. BMC Systems Biology, 8 (124). pp. 124. ISSN: 1752-0509

Rausanu, S., Grosan, C., Wu, Z., Parvu, O., Stoica, R. and Gilbert, D. (2014) ''. Neural Computing and Applications, 26 (2). pp. 299 - 311. ISSN: 0941-0643

Wu, Z., Grosan, C. and Gilbert, D. (2014) 'Empirical СʪÃÃÊÓƵ of Computational Intelligence Strategies for Biochemical Systems Modelling', in Terrazas, G., Otero, F. and Masegosa, A. (eds.) Nature Inspired Cooperative Strategies for Optimization (NICSO 2013). Cham : Springer International Publishing. , 512. pp. 245 - 260. ISBN 13: 978-3-319-01692-4.

Gilbert, D. and Parvu, O. (2014) 'Implementation of linear minimum area enclosing traingle algorithm'. Computational and Applied Mathematics, Forthcoming. ISSN: 2238-3603

Gao, Q., Gilbert, D., Heiner, M., Liu, F., MacCagnola, D. and Tree, D. (2013) ''. IEEE/ACM Transactions on Computational Biology and Bioinformatics, 10 (2). pp. 337 - 351. ISSN: 1545-5963

Heiner, M. and Gilbert, D. (2013) ''. Progress in Biophysics and Molecular Biology, 111 (2-3). pp. 119 - 128. ISSN: 0079-6107

Gu, X., Reid, D., Higham, DJ. and Gilbert, D. (2013) ''. PLoS One, 8 (1). pp. e53734 - e53734.

Kerkhoven, EJ., Achcar, F., Alibu, VP., Burchmore, RJ., Gilbert, IH., Trybi lo, M., Driessen, NN., Gilbert, D., Breitling, R., Bakker, BM. and others. et al. (2013) ''. PLoS computational biology, 9 (12). pp. e1003371 - e1003371. ISSN: 1553-734X

Rausanu, S., Grosan, C., Wu, Z., Parvu, O. and Gilbert, D. (2013) ''.2013 IEEE Congress on Evolutionary Computation (CEC). IEEE. IEEE. pp. 1602 - 1609.

Pârvu, O., Gilbert, D., Heiner, M., Liu, F. and Saunders, N. (2013) 'Modelling and Analysis of Phase Variation in Bacterial Colony Growth', in Gupta, A. and Henzinger, TA. (eds.) Computational Methods in Systems Biology. Springer Berlin Heidelberg. , 8130 LNBI. pp. 78 - 91. ISBN 13: 9783642407079.

Gilbert, D., Heiner, M., Liu, F. and Saunders, N. (2013) 'Colouring space-a coloured framework for spatial modelling in systems biology', inApplication and Theory of Petri Nets and Concurrency. Springer Berlin Heidelberg. , 7927 LNCS. pp. 230 - 249. ISBN 13: 9783642386961.

Soldatova, L., Gao, Q. and Gilbert, D. (2012) ''. Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), 7605 LNBI. pp. 390 - 393. ISSN: 0302-9743

Maccagnola, D., Messina, E., Gao, Q. and Gilbert, D. (2012) ''.2012 Winter Simulation Conference - (WSC 2012). Winter Simulation Conference. IEEE. pp. 294 - 294. ISSN: 0891-7736

Wu, Z., Yang, S. and Gilbert, D. (2012) 'A hybrid approach to piecewise modelling of biochemical systems', inParallel Problem Solving from Nature-PPSN XII. Springer Berlin Heidelberg. , 7491 LNCS. pp. 519 - 528. ISBN 13: 9783642329364.

Lodhi, H. and Gilbert, D. (2011) 'Bootstrapping parameter estimation in dynamic systems', in Elomaa, T., Hollmen, J. and Mannila, H. (eds.) Discovery Science: Proceedings of the 14th International Conference, DS 2011, Espoo, Finland, October 5-7, 2011. Springer. , 6926. pp. 194 - 208. ISBN 10: 3642244769. ISBN 13: 978-3642244766.

Gao, Q., Liu, F., Gilbert, D., Heiner, M. and Tree, D. (2011) ''.9th International Conference on Computational Methods in Systems Biology (CMSB 2011). Paris, France. 21 - 23 September. ACM. pp. 209 - 218.

Vijayakrishnan, S., Callow, P., Nutley, MA., McGow, DP., Gilbert, D., Kropholler, P., Cooper, A., Byron, O. and Lindsay, JG. et al. (2011) ''. Biochemical Journal, 437 (3). pp. 565 - 574. ISSN: 0264-6021

Gao, Q., Liu, F., Tree, D. and Gilbert, D. (2011) 'Multi-cell modelling using coloured petri nets applied to planar cell polarity'.2nd International Workshop on Biological Processes & Petri Nets (BioPPN 2011). Newcastle, UK. 20 CEUR Workshop Proceedings (http://ceur-ws.org). pp. 135 - 150. ISSN: 1613-0073

Gilbert, D. and Heiner, M. (2011) ''.Applications and Theory of Petri Nets 32nd International Conference (PETRI NETS 2011). Newcastle, UK. 20 - 24 June. Springer. pp. 17 - 37. ISSN: 0302-9743

Wu, Z., Gao, Q. and Gilbert, D. (2010) ''.8th Conference on Computational Methods in Systems Biology (CMSB 2010). Trento, Italy. 29 - 1 October. ACM. pp. 33 - 42.

Gilbert, D., Jaramillo, A., Krasnogor, N. and de Lorenzo, V. (2010) ''. Systems and Synthetic Biology, 4 (3). pp. 145 - 147. ISSN: 1872-5325

Kolch, W., Birtwistle, M., Kholodenko, B., Grindlay, J., Sturm, O., Orton, R., Gilbert, D. and von Kriegsheim, A. et al. (2010) ''.21st Meeting of the European-Association-for-Cancer-Research. Oslo, NORWAY. 26 - 29 June. PERGAMON-ELSEVIER SCIENCE LTD. pp. 3 - 3. ISSN: 1359-6349

Veeramalai, M., Gilbert, D. and Valiente, G. (2010) ''. BMC Bioinformatics, 11 (1). pp. 138. ISSN: 1471-2105

Gilbert, D., Heiner, M., Breitling, R. and Orton, R. (2010) ''. Methods in Molecular Biology, 661. pp. 369 - 384. ISSN: 1064-3745

Priami, C., Breitling, R., Gilbert, D., Heiner, M. and Uhrmacher, AM. (2010) 'Transactions on computational systems biology XII'. Berlin/Heidelberg: Springer. ISSN 10: 3642117112 ISSN 13: 9783642117114

Breitling, R., Donaldson, RA., Gilbert, DR. and Heiner, M. (2010) 'Biomodel engineering – from structure to behavior', in Priami, C., Donaldson, RA., Gilbert, DR. and Heiner, M. (eds.) Transactions on Computational Systems Biology XII. Berlin/Heidelberg : Springer. , 5945/2010. pp. 1 - 12. ISBN 13: 978-3-642-11711-4.

Sturm, OE., Orton, R., Grindlay, J., Birtwistle, M., Vyshemirsky, V., Gilbert, D., Calder, M., Pitt, A., Kholodenko, B. and Kolch, W. et al. (2010) ''. Science Signaling, 3 (153). pp. ra90. ISSN: 1945-0877

Gu, X., Trybilo, M., Ramsey, S., Jensen, M., Fulton, R., Rosser, S. and Gilbert, D. et al. (2010) ''. Systems and Synthetic Biology, 4 (3). pp. 203 - 214. ISSN: 1872-5325

Wang, J., Liu, X., Mustafee, N., Gao, Q., Taylor, SJE. and Gilbert, D. (2009) 'Grid-enabled SIMAP utility: motivation, integration technology and performance results'.UK e-Science All Hands Meeting (AHM 2009). Oxford, UK. 7 - 9 December.

Orton, RJ., Adriaens, ME., Gormand, A., Sturm, OE., Kolch, W. and Gilbert, DR. (2009) ''. BMC Systems Biology, 3 (1). pp. 100. ISSN: 1752-0509

Heiner, M., Lehrack, S., Gilbert, D. and Marwan, W. (2009) 'Extended stochastic petri nets for model-based design of wetlab experiments', in Priami, C., Back, R-J. and Petre, I. (eds.) Transactions on Computational Systems Biology XI. Berlin/Heidelberg : Springer. , 5750/2009. pp. 138 - 163. ISBN 13: 978-3-642-04185-3.

Park, SH., Reyes, JA., Gilbert, DR., Kim, JW. and Kim, S. (2009) ''. BMC Bioinformatics, 10 (1). pp. 36. ISSN: 1471-2105

Torrance, GM., Leader, DP., Gilbert, DR. and Milner-White, EJ. (2009) ''. Journal of Molecular Biology, 385 (4). pp. 1076 - 1086. ISSN: 0022-2836

Gilbert, D., Breitling, R., Heiner, M. and Donaldson, R. (2009) 'An introduction to BioModel Engineering, illustrated for signal transduction pathways', in Corne, DW., Frisco, P., Paun, G., Rozenberg, G. and Salomaa, A. (eds.) Membrane Computing. Springer Berlin Heidelberg. , 5391/2009. pp. 13 - 28. ISBN 13: 9783540958840.

von Kriegsheim, A., Baiocchi, D., Birtwistle, M., Sumpton, D., Bienvenut, W., Morrice, N., Yamada, K., Lamond, A., Kalna, G., Orton, R., Gilbert, D. and Kolch, W. et al. (2009) ''. Nature Cell Biology, 11 (12). pp. 1458 - 1464. ISSN: 1476-4679

Breitling, R., Gilbert, D., Heiner, M. and Orton, R. (2008) ''. Briefings in Bioinformatics, 9 (5). pp. 404 - 421. ISSN: 1467-5463

Heiner, M., Gilbert, D. and Donaldson, R. (2008) 'Petri nets for systems and synthetic biology', in Bernardo, M., Degano, P. and Zavattaro, G. (eds.) Formal Methods for Computational Systems Biology. Berlin/Heidelberg : Springer. , 5016/2008. pp. 215 - 264. ISBN 13: 978-3-540-68892-1.

Donaldson, R. and Gilbert, D. (2008) 'A model checking approach to the parameter estimation of biochemical pathways', in Heiner, M. and Uhrmacher, AM. (eds.) Computational Methods in Systems Biology. Springer Berlin Heidelberg. , 5307/2008. pp. 269 - 287. ISBN 13: 9783540885610.

Gilbert, D., Heiner, M., Rosser, S., Fulton, R., Gu, X. and Trybilo, M. (2008) 'A case study in model-driven synthetic biology', in Hinchey, M., Pagnoni, A., Rammig, FJ. and Schmeck, H. (eds.) Biologically-Inspired Collaborative Computing. Springer US. , 268/2008. pp. 163 - 175. ISBN 13: 9780387096544.

Veeramalai, M. and Gilbert, D. (2008) ''. Bioinformatics, 24 (23). pp. 2698 - 2705. ISSN: 1367-4803

Donaldson, R. and Gilbert, D. (2008) 'A Monte Carlo Model checker for probabilistic LTL with numerical constraints'. Place of publication: Department of Computer Science at University of Glasgow.

Orton, RJ., Sturm, OE., Gormand, A., Kolch, W. and Gilbert, DR. (2008) ''. IET Systems Biology, 2 (4). pp. 173 - 183. ISSN: 1751-8849